Plot
A secretive sect of Freemasons is trying to decipher several Dead Sea scrolls found in Jerusalem, Israel, and is willing to go to great length in order to do so. The key storyline revolves around an upcoming supreme court nomination of a new judge. In order to secure to the nomination, the conspirators kidnap the wife of a U.S. Senator, which is the trigger to the entire plot. The supreme court will soon rule on legal evidence issue, which will impact the faith of a renowned Dead Sea scholar currently awaiting execution for killing his research team as well as for his wife murder, although her body was never found. The conspirators are looking to overturn the scholar's conviction therefore freeing him and allowing the decipher of the scrolls.
The story begins in Atlanta when Sara Collins (nee Jerome) vanishes from a dinner held in her honor. Sara is a teacher, in early 30's, and Senator Jeffrey Collins's second wife. She had previously told her husband that she had a secret to tell him, but disappeared before she could reveal it to him.
The investigation into her kidnapping starts to uncover secrets. While Senator Collins is clean and desperately wants his wife returned, even paying the ransoms will not get her back. He paid $5,000,000 in cash and then voted as requested by kidnappers to confirm a Supreme Court nominee. He initially held support for this nominee, despite being his long time close friend, because he knew the nominee seduced an underage girl.
What Senator Collins did not know was that the underage girl was actually his daughter, Marcy. Marcy ended the affair with the judge after being caught by Sara, but was later raped by him and subsequently became pregnant. Marcy believes she was then poisoned to induce a miscarriage.
Senator Collins' son, Max, had gotten into trouble over underage drinking and DUI. Sara urged Jeffrey to put him in a rehab facility. There, Max expressed a hatred for his stepmother, which was used against her by the conspiracy (his counselor Quinn was one of the conspirators).
Senator Collins' ex-wife worked her way back into Senator Collins's life via their mutual children. She confronted Sara over the birth of her child but despite her hatred of Sara, never revealed the truth, given her disappearance. Senator Collins' ex-wife was financially broke and eventually took a bribe from Senator Collins' chief of staff, which she gave to Marcy to help her daughter bail her boyfriend out of jail.
Sara went through torture and manipulation when she was in captivity. She was fed certain information and that made her believe that Collins took her kidnapping as opportunity to advance his career. These lies led her to flee to the last place where she felt anonymous and safe - the same place she fled the rehab facility once before, Gloucester, Massachusetts.
FBI Agent Graham Kelton solved many aspects of the kidnapping, and even managed to contact the mysterious person leaving St. Nathan prayer cards with clues for him. He found out that the person wanted the conspiracy undone more than Sara's rescue. He eventually solved the real ransom demand of the conspiracy, the supreme court vote, but after stopping the vote with a bioterrorist attack simulation, he was shot and killed by one of the conspirators, before he can give any details.
FBI Agent Lucas takes over after the killing of Agent Graham, and successfully tracks down more leads, leading to a raid on a conspiracy site where dead sea scrolls were being scanned into a computer. However, while he gets very close to Sara a few times after she escapes, he is unable to unravel the false trail Sara left behind her as she escaped to her safe place with Peter Manning.
Agent Lucas also discovers that a rehab facility, known as Encompass, was used as a front by the conspiracy to recruit addicted vulnerable youth. Sara, Ben, Max and Quinn all attended this same rehab facility, with Quinn later becoming a counselor and a recruiter there. Sara had been checked into this facility by her parents 12 years ago when she was a 19, however, she escaped. Quinn later shared that Sara was the only person to ever escape the facility, and it might have been a factor in her kidnapping. After Sara's escape she lived for few months under a false name in Gloucester, Massachusetts. There she worked as a waitress in a bar, got into a relationship with Peter Manning local fisherman, and later got pregnant by him. Sara then left without telling anyone, including her boyfriend, gave birth to the a baby girl, name Becca. However, her parents raised Becca as her sister for a reason not fully explained in the show. The FBI wonders why would Sara who was tortured at the Encompass facility conceived Senator Collins to send Max there, but this question is never addressed.
Ben Wilson, Marcy Collins' boyfriend, was released on bond from Marcy, who believed his story. He believes he is the father of Marcy's unborn child, and despite his innocence over prior events, was enraged by the rape of Marcy and murdered the Judge who attack her. In the end of the show it was unclear If he got away with it. It is also never confirmed if the Marcy's unborn child was a result of her affair with the judge or her relationship with Ben, as both took place at the same time.
Agent Lucas uncover the mystery around the scholar. After the scholar found the Dead Sea Scrolls he found hidden messages there he thought was so dangerous he destroyed his research, and killed of his research team. He also lied about murdering his wife in order to protect her. However, it was later revealed the conspirators found out his wife was actually alive and kidnapped her leverage to coerce his help with the decipher once he is released from prison.
Peter Manning is a man searching for the love of his life, who one day vanished from Massachusetts, where he worked on a fishing boat. He sees her again in the news as recently kidnapped wife of Senator Collins news. He still loves her, but his lead to the FBI is classified as low priority. He embarks on a mission to find her. He finds his child, but can't find a way to make things right. He gives up in the end, and returns to his boat to find that Sara is there. It's the place she ran to before; where she could be anonymous and find love. Judy Nash is a reporter covering Sara's kidnapping. She believes in her story about Peter Manning fathering a child with Sara, but is cut off as she doesn't have the proof. While Peter got her proof that he was the father, there is no proof about the mother. Without Sara, there is no story.
The series finale shows Senator Collins in a family dinner with his ex-wife and their two children. Sara, meanwhile, appears in aboard Peter Manning's boat. She says to explains that twelve years ago she was pregnant and was taken away by "them". Peter interrupts her, and says, "none of that matters now. You're home", and they embrace.